STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH87473.1Homologs of previously reported genes of unknown function. (263 aa)    
Predicted Functional Partners:
CCH86886.1
Homologs of previously reported genes of unknown function.
 
     0.780
CCH87138.1
Putative transcription antitermination regulator with GAF sensor domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; regulator.
 
     0.780
CCH88309.1
Homologs of previously reported genes of unknown function.
 
     0.778
CCH89102.1
Two-component response regulator receiver and ANTAR, GAF and CheY domains; Function of strongly homologous gene; regulator.
 
     0.778
CCH89986.1
Conserved protein of unknown function, putative GAF domain; Homologs of previously reported genes of unknown function.
 
     0.776
CCH86887.1
Response regulator with antiterminator output domain; Function of strongly homologous gene; regulator.
 
     0.775
CCH85813.1
Response regulator with antiterminator output domain; Function of strongly homologous gene; regulator.
  
     0.771
CCH86750.1
Response regulator with antiterminator output domain; Function of strongly homologous gene; regulator.
  
     0.768
CCH85820.1
Transcriptional regulator, TetR family; Function of strongly homologous gene; regulator.
  
     0.601
CCH89101.1
Protein of unknown function; No homology to any previously reported sequences.
  
     0.571
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.