STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH87485.1Homologs of previously reported genes of unknown function. (247 aa)    
Predicted Functional Partners:
CCH87486.1
ATPase-like protein.
 
     0.752
CCH89136.1
Membrane protein of unknown function; No homology to any previously reported sequences.
  
     0.595
CCH88531.1
Homologs of previously reported genes of unknown function.
  
     0.592
CCH87484.1
Putative transcriptional regulator, PucR family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
       0.565
CCH87130.1
Homologs of previously reported genes of unknown function.
  
     0.528
CCH89640.1
Homologs of previously reported genes of unknown function.
  
     0.528
CCH87124.1
Homologs of previously reported genes of unknown function.
  
     0.524
trxB
Two component thioredoxin reductase carring response regulator; Function of strongly homologous gene; enzyme.
       0.513
CCH87488.1
Two component signal transduction histidine kinase; Function of strongly homologous gene; enzyme.
       0.513
CCH85876.1
Putative Lipopolysaccharide biosynthesis translocase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
     0.495
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.