Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CCH87486.1ATPase-like protein. (899 aa)    
Predicted Functional Partners:
CCH87485.1
Homologs of previously reported genes of unknown function.
 
     0.751
CCH87488.1
Two component signal transduction histidine kinase; Function of strongly homologous gene; enzyme.
  
    0.708
trxB
Two component thioredoxin reductase carring response regulator; Function of strongly homologous gene; enzyme.
       0.701
CCH87484.1
Putative transcriptional regulator, PucR family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
  
    0.570
CCH89640.1
Homologs of previously reported genes of unknown function.
  
     0.544
CCH85723.1
Transcriptional regulator, putative ATPase, winged helix family; Function of strongly homologous gene; regulator.
 
  
 0.538
CCH90928.1
Protein of unknown function; No homology to any previously reported sequences.
 
     0.511
CCH87124.1
Homologs of previously reported genes of unknown function.
 
  
 0.510
CCH87877.1
Homologs of previously reported genes of unknown function.
  
    0.502
CCH85876.1
Putative Lipopolysaccharide biosynthesis translocase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
     0.481
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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