STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH87488.1Two component signal transduction histidine kinase; Function of strongly homologous gene; enzyme. (448 aa)    
Predicted Functional Partners:
trxB
Two component thioredoxin reductase carring response regulator; Function of strongly homologous gene; enzyme.
 
   
 0.977
CCH89434.1
Thioredoxin reductase (NADPH); Function of strongly homologous gene; enzyme.
 
 
 0.943
CCH90658.1
Sensor protein with an histidine kinase signal transduction domain; Function of strongly homologous gene; regulator.
 
0.934
flgD
Flagellar hook capping protein; Function of strongly homologous gene; structure.
  
    0.806
CCH85554.1
Serine phosphatase RsbU, regulator of sigma subunit; Function of strongly homologous gene; enzyme.
 
 0.789
CCH86704.1
Thioredoxin-disulfide reductase; Function of strongly homologous gene; enzyme.
 
   
 0.788
CCH89654.1
Putative PAS/PAC sensor protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 
 0.783
CCH85780.1
Serine phosphatase RsbU, regulator of sigma subunit (modular protein); Function of strongly homologous gene; enzyme.
 
 
 0.781
CCH89172.1
Putative PAS/PAC sensor protein (fragment); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative receptor.
 
 
 
 0.775
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 
 0.749
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.