STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CCH87504.1Putative anti-sigma regulatory factor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor. (166 aa)    
Predicted Functional Partners:
sigF
RNA polymerase sigma-F factor; Function of strongly homologous gene; factor; Belongs to the sigma-70 factor family.
 
 
 0.962
CCH87500.1
Homologs of previously reported genes of unknown function.
  
     0.745
SsgA
Sporulation and cell division protein, SsgA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; factor.
  
     0.727
CCH89648.1
Anti-sigma factor antagonist; Function of strongly homologous gene; factor; Belongs to the anti-sigma-factor antagonist family.
 
 
 0.726
CCH90047.1
Homologs of previously reported genes of unknown function.
  
     0.720
CCH89766.1
Homologs of previously reported genes of unknown function.
  
     0.719
CCH90424.1
Conserved protein of unknown function, putative Carboxypeptidase domain; Homologs of previously reported genes of unknown function.
  
     0.703
CCH87506.1
Anti-anti-sigma factor; Function of homologous gene experimentally demonstrated in an other organism; factor; Belongs to the anti-sigma-factor antagonist family.
 
 
 0.679
CCH87208.1
Cytidine deaminase; Function of strongly homologous gene; enzyme.
  
     0.660
CCH89691.1
Homologs of previously reported genes of unknown function.
  
     0.635
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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