STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH87504.1Putative anti-sigma regulatory factor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor. (166 aa)    
Predicted Functional Partners:
sigF
RNA polymerase sigma-F factor; Function of strongly homologous gene; factor; Belongs to the sigma-70 factor family.
 
 
 0.965
CCH87500.1
Homologs of previously reported genes of unknown function.
  
     0.745
CCH89648.1
Anti-sigma factor antagonist; Function of strongly homologous gene; factor; Belongs to the anti-sigma-factor antagonist family.
 
 
 0.731
SsgA
Sporulation and cell division protein, SsgA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; factor.
  
     0.727
CCH90047.1
Homologs of previously reported genes of unknown function.
  
     0.720
CCH89766.1
Homologs of previously reported genes of unknown function.
  
     0.719
CCH90424.1
Conserved protein of unknown function, putative Carboxypeptidase domain; Homologs of previously reported genes of unknown function.
  
     0.703
CCH87506.1
Anti-anti-sigma factor; Function of homologous gene experimentally demonstrated in an other organism; factor; Belongs to the anti-sigma-factor antagonist family.
 
 
 0.684
CCH87208.1
Cytidine deaminase; Function of strongly homologous gene; enzyme.
  
     0.660
CCH90899.1
Putative PAS/PAC light sensor protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative receptor.
 
 
 0.648
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.