STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH87536.1Allophanate hydrolase subunit 1; Function of strongly homologous gene; enzyme. (202 aa)    
Predicted Functional Partners:
ahs
Allophanate hydrolase, subunit2; Function of strongly homologous gene; enzyme.
 
 0.999
pxpA
Putative lactam utilization protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
  
 0.999
CCH87538.1
Mn2+/Fe2_transporter, NRAMP family; Function of strongly homologous gene; transporter.
    0.981
CCH87539.1
Homologs of previously reported genes of unknown function; Belongs to the D-glutamate cyclase family.
    0.971
CCH90575.1
Aminoglycoside 2'-N-acetyltransferase (modular protein); Function of strongly homologous gene; enzyme.
  
  
 0.603
hemK
Methyltransferase HemK; Function of strongly homologous gene; enzyme.
       0.536
bccA
Acetyl-/propionyl-coenzyme A carboxylase alpha chain [Biotin carboxylase; Function of strongly homologous gene; enzyme.
 
    0.490
CCH88179.1
Flavin reductase domain protein FMN-binding; Function of strongly homologous gene; enzyme.
  
    0.445
CCH87617.1
Transcriptional regulator, IclR family; Function of strongly homologous gene; regulator.
  
    0.441
CCH87657.1
Transcriptional regulator, IclR family; Function of strongly homologous gene; regulator.
  
    0.441
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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