STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH87546.1Dyp-type peroxidase; Function of strongly homologous gene; enzyme. (303 aa)    
Predicted Functional Partners:
efeO
Ferrous iron transport binding protein; Function of homologous gene experimentally demonstrated in an other organism; transporter.
  
  
 0.827
copC-2
Copper resistance protein CopC; Function of strongly homologous gene; transporter.
  
  
 0.706
CCH87547.1
Mannose-6-phosphate isomerase; Function of strongly homologous gene; enzyme.
       0.682
copC
Copper resistance protein; Function of strongly homologous gene; transporter.
  
  
 0.575
CCH86208.1
Homologs of previously reported genes of unknown function.
  
  
 0.547
CCH88450.1
Homologs of previously reported genes of unknown function.
  
  
 0.547
CCH88480.1
Homologs of previously reported genes of unknown function.
  
  
 0.547
CCH87548.1
Homologs of previously reported genes of unknown function.
       0.462
poxB
Pyruvate dehydrogenase/oxidase: FAD-and thiamine PPi-binding; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the TPP enzyme family.
       0.436
efeU
Ferrous iron permease efeU; Function of strongly homologous gene; transporter.
  
  
 0.413
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.