STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH87556.1NADPH-dependent FMN reductase; Function of strongly homologous gene; enzyme. (208 aa)    
Predicted Functional Partners:
CCH87557.1
Flavin-dependent oxidoreductase, F420-dependent methylene-tetrahydromethanopterin reductase; Function of strongly homologous gene; enzyme.
 0.996
CCH87582.1
NADPH-dependent fmn reductase.
  
  
  0.926
cysH
Phosphoadenosine phosphosulfate reductase; Reduction of activated sulfate into sulfite. Belongs to the PAPS reductase family. CysH subfamily.
   
 
 0.917
sir
Sulfite reductase [ferredoxin]; Function of strongly homologous gene; enzyme; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
   
 
 0.904
ribF
Riboflavin biosynthesis protein ribF [Includes: Riboflavin kinase; Function of strongly homologous gene; enzyme; Belongs to the ribF family.
    
  0.902
cysA-2
Thiosulfate sulfurtransferase; Function of strongly homologous gene; enzyme.
     
  0.858
CCH89557.1
ABC-type nitrate/sulfonate/bicarbonate transport system, extracellular component; Function of strongly homologous gene; transporter.
 
 
 0.851
CCH89558.1
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component; Function of strongly homologous gene; transporter.
 
 
  0.806
tauD
Alpha-ketoglutarate-dependent taurine dioxygenase (fragment); Function of strongly homologous gene; enzyme.
 
 
  0.792
CCH86771.1
Oxidoreductase molybdopterin binding; Function of strongly homologous gene; enzyme.
     
  0.741
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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