STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH87589.1ABC transporter, solute binding protein; Function of strongly homologous gene; transporter. (323 aa)    
Predicted Functional Partners:
CCH87592.1
Amino acid ABC transporter membrane protein (fragment).
 0.955
CCH87591.1
Putative arginine/ornithine ABC transport ATP-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 0.919
CCH89696.1
Polar amino acid ABC transporter, inner membrane subunit; Function of strongly homologous gene; transporter.
 
 0.911
CCH87593.1
GCN5-related N-acetyltransferase.
  
 0.893
CCH87418.1
Transporter subunit: permease component of ABC superfamily transporter; Function of strongly homologous gene; transporter.
 
 0.779
gluD
Glutamate transport system permease protein gluD; Function of strongly homologous gene; transporter.
 
 0.755
CCH87419.1
Transporter subunit: ATP-binding component of ABC superfamily transporter; Function of strongly homologous gene; transporter.
 
 0.695
CCH87590.1
Amino acid-binding transporter; Function of strongly homologous gene; transporter.
 
    
0.695
CCH89694.1
Polar amino acid transport protein, ATP-binding protein; Function of strongly homologous gene; transporter.
 
 0.623
CCH87594.1
Homologs of previously reported genes of unknown function.
 
     0.578
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.