STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH87621.1ABC transporter ATP-binding protein; Function of strongly homologous gene; transporter; Belongs to the ABC transporter superfamily. (339 aa)    
Predicted Functional Partners:
appC
Oligopeptide transport system permease protein appC; Function of strongly homologous gene; transporter.
 0.987
CCH88344.1
ABC-type oligopeptide transport permease; Function of strongly homologous gene; transporter.
 0.985
dppC
Dipeptide transport system permease protein dppC; Function of strongly homologous gene; transporter.
 0.980
CCH86582.1
Putative peptide transport permease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 0.980
CCH87619.1
Binding-protein-dependent transport systems inner membrane component; Function of strongly homologous gene; transporter.
 0.969
CCH87620.1
Oligopeptide/dipeptide ABC transporter, ATPase subunit; Function of strongly homologous gene; transporter; Belongs to the binding-protein-dependent transport system permease family.
 
0.904
CCH89594.1
Peptide transport permease; Function of strongly homologous gene; transporter.
 0.891
CCH88193.1
ABC transporter permease protein; Function of strongly homologous gene; transporter.
 0.881
CCH87618.1
Extracellular solute-binding protein family 5; Function of strongly homologous gene; transporter.
 
 0.880
CCH88174.1
Oligopeptide ABC transporter, permease protein; Function of strongly homologous gene; transporter.
 0.879
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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