STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH87622.1Alpha-L-rhamnosidase; Function of strongly homologous gene; enzyme. (881 aa)    
Predicted Functional Partners:
CCH87626.1
Inosine/uridine-preferring nucleoside hydrolase; Function of strongly homologous gene; enzyme.
 
    0.892
CCH87625.1
Beta-xylosidase; Function of strongly homologous gene; enzyme; Belongs to the glycosyl hydrolase 43 family.
 
     0.867
CCH87627.1
Glycoside hydrolase; Function of strongly homologous gene; enzyme; Belongs to the glycosyl hydrolase 2 family.
 
 
 0.837
CCH87620.1
Oligopeptide/dipeptide ABC transporter, ATPase subunit; Function of strongly homologous gene; transporter; Belongs to the binding-protein-dependent transport system permease family.
 
     0.813
CCH87623.1
Esterase/lipase-like protein; Function of strongly homologous gene; enzyme.
 
 
   0.808
CCH87621.1
ABC transporter ATP-binding protein; Function of strongly homologous gene; transporter; Belongs to the ABC transporter superfamily.
 
     0.804
CCH87624.1
alpha-L-rhamnosidase A; Function of strongly homologous gene; enzyme.
 
    
0.797
CCH87619.1
Binding-protein-dependent transport systems inner membrane component; Function of strongly homologous gene; transporter.
       0.773
CCH88400.1
Glycoside hydrolase family 2 sugar binding; Function of strongly homologous gene; enzyme; Belongs to the glycosyl hydrolase 2 family.
 
 
 0.714
CCH87618.1
Extracellular solute-binding protein family 5; Function of strongly homologous gene; transporter.
 
     0.664
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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