STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH87625.1Beta-xylosidase; Function of strongly homologous gene; enzyme; Belongs to the glycosyl hydrolase 43 family. (490 aa)    
Predicted Functional Partners:
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
 
 0.904
CCH87622.1
Alpha-L-rhamnosidase; Function of strongly homologous gene; enzyme.
 
     0.868
CCH87624.1
alpha-L-rhamnosidase A; Function of strongly homologous gene; enzyme.
 
     0.860
uxaC-2
Uronate isomerase; Function of strongly homologous gene; enzyme.
 
  
 0.839
uxaC
Uronate isomerase; Function of strongly homologous gene; enzyme.
 
  
 0.838
uidA
Beta-glucuronidase; Function of strongly homologous gene; enzyme; Belongs to the glycosyl hydrolase 2 family.
 
  
  0.838
uidA-2
Beta-glucuronidase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the glycosyl hydrolase 2 family.
 
  
  0.838
CCH87627.1
Glycoside hydrolase; Function of strongly homologous gene; enzyme; Belongs to the glycosyl hydrolase 2 family.
 
     0.834
CCH87626.1
Inosine/uridine-preferring nucleoside hydrolase; Function of strongly homologous gene; enzyme.
 
     0.828
CCH87620.1
Oligopeptide/dipeptide ABC transporter, ATPase subunit; Function of strongly homologous gene; transporter; Belongs to the binding-protein-dependent transport system permease family.
       0.780
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.