STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH87632.1Transcriptional regulator, LacI family; Function of strongly homologous gene; regulator. (362 aa)    
Predicted Functional Partners:
gltB
Glutamate synthase [NADPH] large chain (NADPH-GOGAT); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
    
 
 0.826
CCH90840.1
Protein of unknown function; No homology to any previously reported sequences.
  
     0.764
ptsH
Phosphocarrier protein HPr; Function of strongly homologous gene; carrier.
   
 
 0.683
uidA
Beta-glucuronidase; Function of strongly homologous gene; enzyme; Belongs to the glycosyl hydrolase 2 family.
     
 0.569
CCH87634.1
Homologs of previously reported genes of unknown function.
       0.552
CCH90608.1
PTS system, fructose subfamily, IIC subunit; Function of strongly homologous gene; transporter.
     
 0.498
uxaC
Uronate isomerase; Function of strongly homologous gene; enzyme.
 
  
 0.496
uxaC-2
Uronate isomerase; Function of strongly homologous gene; enzyme.
 
  
 0.491
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
 
 0.478
bglB-2
Thermostable beta-glucosidase B; Function of strongly homologous gene; enzyme.
    
  0.469
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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