STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CCH87648.1Putative Nitrilase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (251 aa)    
Predicted Functional Partners:
gltB
Glutamate synthase [NADPH] large chain (NADPH-GOGAT); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
    
 0.926
CCH87647.1
Aminotransferase; Function of strongly homologous gene; enzyme.
 
 0.875
korA
2-oxoacid:ferredoxin oxidoreductase, alpha subunit; Function of strongly homologous gene; enzyme.
    
 0.728
CCH87646.1
Nitrogen transcription regulator, NmrA family; Function of strongly homologous gene; regulator.
  
    0.716
fdhA2
Formate dehydrogenase, alpha subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
   
 
 0.664
gltD
Glutamate synthase [NADPH] small chain, (NADPH-GOGAT); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
 0.664
sucA
2-oxoglutarate decarboxylase; Function of strongly homologous gene; enzyme.
     
 0.656
gdh
Glutamate dehydrogenase (NAD); Function of strongly homologous gene; enzyme.
     
 0.646
asp
Aspartate aminotransferase; Function of strongly homologous gene; enzyme.
  
 
 0.606
frk
Sugar kinase, ribokinase; Function of strongly homologous gene; enzyme.
  
   0.556
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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