STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH87681.1Sigma54 specific transcriptional regulator, Fis family; Function of strongly homologous gene; factor. (492 aa)    
Predicted Functional Partners:
CCH87679.1
Homologs of previously reported genes of unknown function.
 
     0.895
CCH87680.1
Putative amidohydrolase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.876
CCH87678.1
Putative alcohol dehydrogenase (Zinc-containing) (AdhT-like); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
    0.766
adh-3
Alcohol dehydrogenase (Zinc-containing) (AdhT-like); Function of strongly homologous gene; enzyme.
 
    0.551
CCH87925.1
Sigma 54 interacting domain protein; Function of strongly homologous gene; factor.
  
     0.545
CCH87919.1
RNA polymerase, sigma 54 (sigma N) factor; Function of strongly homologous gene; factor.
 
  
 0.511
dhaK
PTS-dependent dihydroxyacetone kinase, dihydroxyacetone binding subunit dhaK; Function of homologous gene experimentally demonstrated in an other organism; putative enzyme.
   
 
 0.471
dhaL
PTS-dependent dihydroxyacetone kinase, ADP-binding subunit DhaL (Glycerone kinase) (DHA kinase); Function of strongly homologous gene; enzyme.
   
 
 0.471
CCH87978.1
Exported protein of unknown function; No homology to any previously reported sequences.
  
     0.433
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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