STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rbsA-3ABC transporter, ATP binding subunit (putative high-affinity D-ribose transport); Function of strongly homologous gene; transporter. (526 aa)    
Predicted Functional Partners:
CCH87698.1
Monosaccharide ABC transporter membrane protein, CUT2 family (modular protein); Belongs to the binding-protein-dependent transport system permease family.
 0.979
CCH90848.1
Monosaccharide ABC-type transport systems, membrane component of ABC superfamily; Function of homologous gene experimentally demonstrated in an other organism; transporter; Belongs to the binding-protein-dependent transport system permease family.
 0.944
rbsC
ABC transporter, Membrane component (putative high-affinity D-ribose transport protein); Function of strongly homologous gene; transporter; Belongs to the binding-protein-dependent transport system permease family.
 0.923
CCH86354.1
Sugar uptake ABC transporter permease; Function of strongly homologous gene; transporter; Belongs to the binding-protein-dependent transport system permease family.
 0.915
CCH86355.1
Ribose transport system permease protein rbsC; Function of strongly homologous gene; transporter; Belongs to the binding-protein-dependent transport system permease family.
 0.895
rbsB-2
Ribose binding protein/LacI transcriptional regulator; Function of strongly homologous gene; regulator.
 
 0.888
rbsC-2
Ribose transport system permease protein rbsC; Function of strongly homologous gene; enzyme; Belongs to the binding-protein-dependent transport system permease family.
 0.878
CCH90849.1
Putative Ribose transport system permease protein rbsC; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Belongs to the binding-protein-dependent transport system permease family.
 
 0.872
rbsB
ABC transporter; Function of strongly homologous gene; transporter.
 
 0.869
CCH86357.1
Sugar uptake ABC transporter solute-binding protein; Function of strongly homologous gene; transporter.
 
 0.816
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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