Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
CCH87700.1Oxidoreductase domain protein; Function of strongly homologous gene; enzyme. (394 aa)    
Predicted Functional Partners:
CCH87701.1
Sugar phosphate isomerase domain protein TIM barrel; Function of strongly homologous gene; enzyme.
 
 
 0.958
rbsB-2
Ribose binding protein/LacI transcriptional regulator; Function of strongly homologous gene; regulator.
 
  
 0.870
CCH88164.1
Homologs of previously reported genes of unknown function.
 
 
 0.727
CCH88165.1
Homologs of previously reported genes of unknown function.
 
 
 0.601
xylA
Xylose isomerase; Function of strongly homologous gene; enzyme; Belongs to the xylose isomerase family.
 
  
 0.533
CCH87702.1
Methyltransferase type 11; Function of strongly homologous gene; enzyme.
       0.509
CCH87704.1
Putative xylitol oxidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 
 0.426
lysS
Lysyl-tRNA synthetase; Function of strongly homologous gene; enzyme; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.420
CCH89710.1
Homologs of previously reported genes of unknown function.
  
    0.420
CCH87703.1
Regulatory protein, LuxR.
       0.419
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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