Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CCH87701.1Sugar phosphate isomerase domain protein TIM barrel; Function of strongly homologous gene; enzyme. (335 aa)    
Predicted Functional Partners:
CCH87700.1
Oxidoreductase domain protein; Function of strongly homologous gene; enzyme.
 
 
 0.958
rbsB-2
Ribose binding protein/LacI transcriptional regulator; Function of strongly homologous gene; regulator.
 
    0.865
CCH90608.1
PTS system, fructose subfamily, IIC subunit; Function of strongly homologous gene; transporter.
  
 
 0.798
CCH88190.1
Oxidoreductase; Function of strongly homologous gene; enzyme.
 
 
 0.788
CCH88166.1
Hydroxypyruvate isomerase; Function of strongly homologous gene; enzyme; Belongs to the hyi family.
 
  
 0.595
CCH87702.1
Methyltransferase type 11; Function of strongly homologous gene; enzyme.
       0.509
xylA
Xylose isomerase; Function of strongly homologous gene; enzyme; Belongs to the xylose isomerase family.
 
  
 0.495
CCH87677.1
Putative dehydrogenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 
 0.463
CCH87696.1
Transcriptional regulator/sugar kinase; Function of strongly homologous gene; regulator.
 
  
 0.441
CCH86530.1
Dehydrogenase; Function of strongly homologous gene; enzyme.
 
 
 0.419
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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