STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH87709.1Transcriptional regulator, TetR family; Function of strongly homologous gene; factor. (192 aa)    
Predicted Functional Partners:
CCH87708.1
Short-chain dehydrogenase/reductase SDR; Function of strongly homologous gene; enzyme.
 
     0.819
CCH90767.1
Homologs of previously reported genes of unknown function.
 
   
 0.754
CCH90766.1
Putative Fe-S oxidoreductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
  
 0.736
CCH87707.1
Short-chain dehydrogenase/reductase SDR; Function of strongly homologous gene; enzyme; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.723
CCH90751.1
Putative glycosyl transferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.637
CCH87638.1
Transcriptional regulator, TetR family; Function of strongly homologous gene; regulator.
  
     0.557
CCH87710.1
Flavin-dependent oxidoreductase, F420-dependent methylene-tetrahydromethanopterin reductase; Function of strongly homologous gene; enzyme.
       0.538
CCH90759.1
Putative Creatininase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.536
CCH89146.1
Transcription regulator, TetR family; Function of strongly homologous gene; factor.
  
     0.511
CCH90762.1
Putative von Willebrand factor type A, containing CoxE-like; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.
  
     0.489
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.