STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH87710.1Flavin-dependent oxidoreductase, F420-dependent methylene-tetrahydromethanopterin reductase; Function of strongly homologous gene; enzyme. (342 aa)    
Predicted Functional Partners:
CCH87711.1
Membrane protein of unknown function; No homology to any previously reported sequences.
       0.628
CCH87709.1
Transcriptional regulator, TetR family; Function of strongly homologous gene; factor.
       0.538
CCH87556.1
NADPH-dependent FMN reductase; Function of strongly homologous gene; enzyme.
 0.522
CCH87712.1
HNH endonuclease (fragment); Function of strongly homologous gene; enzyme.
       0.465
CCH87713.1
HNH endonuclease (fragment); Function of strongly homologous gene; enzyme.
       0.465
CCH88157.1
Phthalate 4,5-dioxygenase (modular protein); Function of strongly homologous gene; enzyme; Belongs to the cytochrome P450 family.
  
 
 0.428
CCH89557.1
ABC-type nitrate/sulfonate/bicarbonate transport system, extracellular component; Function of strongly homologous gene; transporter.
  
 
 0.403
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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