STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
CCH87720.1Transcriptional regulator, AraC family; Function of strongly homologous gene; regulator. (278 aa)    
Predicted Functional Partners:
paaE
Phenylacetic acid degradation NADH oxidoreductase; Function of strongly homologous gene; enzyme.
     
 0.784
gltB
Glutamate synthase [NADPH] large chain (NADPH-GOGAT); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
    
 0.779
CCH87721.1
Thioesterase; Function of strongly homologous gene; enzyme.
       0.773
paaD
Phenylacetic acid degradation protein; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
       0.773
paaC
Phenylacetic acid degradation protein; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
       0.773
korA
2-oxoacid:ferredoxin oxidoreductase, alpha subunit; Function of strongly homologous gene; enzyme.
     
 0.644
ribBA
Riboflavin biosynthesis protein ribBA [Includes: 3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.635
paaB
Phenylacetate-CoA oxygenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
       0.532
paaA
Phenylacetic acid degradation protein paaA; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
       0.532
CCH88591.1
Transcriptional regulator, AraC family; Function of strongly homologous gene; regulator.
  
     0.509
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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