STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
paaEPhenylacetic acid degradation NADH oxidoreductase; Function of strongly homologous gene; enzyme. (358 aa)    
Predicted Functional Partners:
paaD
Phenylacetic acid degradation protein; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 0.999
paaC
Phenylacetic acid degradation protein; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 0.999
paaB
Phenylacetate-CoA oxygenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 0.999
paaA
Phenylacetic acid degradation protein paaA; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 0.999
paaK
phenylacetyl-CoA ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).
 
 
 0.988
paaZ
Fused aldehyde dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 
 0.983
CCH86000.1
Putative Thioesterase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 
 0.975
fadB
enoyl-CoA hydratase; Function of strongly homologous gene; enzyme.
 
 
 0.961
CCH88314.1
Dimethylglycine oxidase; Function of strongly homologous gene; enzyme; Belongs to the GcvT family.
  
 
 0.933
soxA
Sarcosine oxidase, alpha subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
 
 0.918
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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