STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH87780.1Antibiotic biosynthesis monooxygenase; Function of strongly homologous gene; enzyme. (97 aa)    
Predicted Functional Partners:
CCH87783.1
Phosphoenolpyruvate-utilising enzyme, mobile region; Function of strongly homologous gene; enzyme.
 
    0.877
ppsA
Phosphoenolpyruvate synthase/pyruvate phosphate dikinase; Function of strongly homologous gene; enzyme.
  
    0.776
fahA
Fumarylacetoacetate (FAA) hydrolase; Function of strongly homologous gene; enzyme.
       0.774
gabD1
Succinate-semialdehyde dehydrogenase [NADP+]; Function of strongly homologous gene; enzyme.
       0.773
CCH87784.1
Transcriptional Regulator, GntR family; Function of strongly homologous gene; factor.
 
     0.514
CCH87454.1
Homologs of previously reported genes of unknown function.
 
    0.499
CCH87718.1
Protein of unknown function; No homology to any previously reported sequences.
 
    0.493
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.