STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH87793.1ABC transport system, substrate-binding protein; Function of strongly homologous gene; transporter. (461 aa)    
Predicted Functional Partners:
CCH88264.1
Putative Amino acid-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative receptor.
  
  
  0.911
CCH85992.1
Extracellular amino acid-binding receptor; Function of strongly homologous gene; transporter.
     
  0.900
CCH87787.1
ABC transporter ATP-binding protein; Function of strongly homologous gene; transporter; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.829
CCH85831.1
High-affinity branched-chain amino acid ABC transporter, ATP binding protein (modular protein); Function of strongly homologous gene; enzyme.
 
  
 0.772
CCH87788.1
ABC transporter, permease protein; Function of strongly homologous gene; transporter; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.738
MODMU_2354
Fragment of putative modular protein: ATP-binding protein (ABC transporter component)(N-terminal); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
  
 0.596
talB
Transaldolase; Function of strongly homologous gene; enzyme.
       0.558
CCH88265.1
ABC-type branched-chain amino acid transport system, permease component; Function of strongly homologous gene; transporter; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.504
CCH88266.1
Branched-chain amino acid ABC-type transport system, permease component; Function of strongly homologous gene; transporter; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.483
MODMU_2358
Fragment of putative modular protein: ATP-binding protein (ABC transporter component)(N-terminal); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
    0.472
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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