Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CCH87825.1Alcohol dehydrogenase, zinc-binding domain protein; Function of strongly homologous gene; enzyme. (351 aa)    
Predicted Functional Partners:
CCH90608.1
PTS system, fructose subfamily, IIC subunit; Function of strongly homologous gene; transporter.
  
 
 0.783
CCH87822.1
Xanthine dehydrogenase, molybdenum binding subunit apoprotein; Function of strongly homologous gene; enzyme.
       0.686
CCH87823.1
Putative xanthine dehydrogenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.686
CCH87824.1
Xanthine dehydrogenase FAD-binding subunit; Function of strongly homologous gene; enzyme.
       0.686
korA
2-oxoacid:ferredoxin oxidoreductase, alpha subunit; Function of strongly homologous gene; enzyme.
    
 0.608
CCH88157.1
Phthalate 4,5-dioxygenase (modular protein); Function of strongly homologous gene; enzyme; Belongs to the cytochrome P450 family.
  
 
 0.590
CCH87827.1
Homologs of previously reported genes of unknown function.
    
  0.542
CCH87817.1
Aryl-alcohol dehydrogenase; Function of strongly homologous gene; enzyme.
 
 
 
0.523
CCH87821.1
Homologs of previously reported genes of unknown function.
       0.522
CCH87826.1
Transcriptional regulator, GntR family; Function of strongly homologous gene; factor.
       0.484
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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