STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH87827.1Homologs of previously reported genes of unknown function. (308 aa)    
Predicted Functional Partners:
CCH88062.1
Thioesterase; Function of strongly homologous gene; enzyme.
   
 0.871
CCH88058.1
L-erythro-3,5-diaminohexanoate dehydrogenase; Function of strongly homologous gene; enzyme.
 
  
  0.843
CCH87826.1
Transcriptional regulator, GntR family; Function of strongly homologous gene; factor.
       0.773
CCH87828.1
Putative cyclase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
    0.765
CCH88060.1
D-Lysine 56-aminomutase, alpha subunit; Function of strongly homologous gene; enzyme.
 
   
 0.690
CCH88061.1
D-lysine 5,6-aminomutase beta subunit, cobalamin B12-binding domain; Function of strongly homologous gene; enzyme.
 
   
 0.668
CCH87825.1
Alcohol dehydrogenase, zinc-binding domain protein; Function of strongly homologous gene; enzyme.
       0.495
CCH88380.1
Major facilitator MFS1 protein; Function of strongly homologous gene; transporter.
   
    0.443
CCH85525.1
Putative secreted metal-dependent cyclase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
    0.439
CCH87752.1
Putative cyclase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
    0.439
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.