STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH87864.1Integrase/recombinase; Function of strongly homologous gene; enzyme; Belongs to the 'phage' integrase family. (342 aa)    
Predicted Functional Partners:
CCH87863.1
Homologs of previously reported genes of unknown function.
       0.539
CCH90066.1
Predicted amidophosphoribosyltransferase; Function of strongly homologous gene; carrier.
   
    0.485
korA
2-oxoacid:ferredoxin oxidoreductase, alpha subunit; Function of strongly homologous gene; enzyme.
    
  0.454
CCH85999.1
Prephenate dehydrogenase; Function of strongly homologous gene; enzyme.
  
    0.429
CCH87862.1
Membrane protein of unknown function; No homology to any previously reported sequences.
       0.420
whiA
Sporulation transcription regulator whiA; Involved in cell division and chromosome segregation.
   
    0.411
CCH89974.1
Protein of unknown function; No homology to any previously reported sequences; Belongs to the SOS response-associated peptidase family.
   
    0.411
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.