STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH87870.1Multidrug efflux transporter AcrB; Function of strongly homologous gene; transporter. (709 aa)    
Predicted Functional Partners:
acpP
Acyl carrier protein (ACP); Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
    
 
 0.795
CCH86305.1
ABC transporter; Function of strongly homologous gene; transporter.
  
     0.540
CCH90528.1
Homologs of previously reported genes of unknown function.
 
      0.519
idsA
Geranylgeranyl pyrophosphate synthase; Function of strongly homologous gene; enzyme; Belongs to the FPP/GGPP synthase family.
 
   
 0.506
CCH87871.1
Homologs of previously reported genes of unknown function.
  
    0.452
crtI
Phytoene dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
     
 0.436
crtB
Phytoene synthase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
     
 0.425
whiB-4
Transcription factor, WhiB family; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
      
 0.421
CCH86304.1
ABC efflux pump, inner membrane subunit, DrrB family; Function of strongly homologous gene; transporter.
  
     0.417
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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