STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
hmgAHomogentisate 1,2-dioxygenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (401 aa)    
Predicted Functional Partners:
hpd
4-hydroxyphenylpyruvate dioxygenase (HPPDase); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 0.997
fahA-2
Fumarylacetoacetase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
 0.969
CCH88372.1
Putative 4-hydroxyphenylpyruvate dioxygenase containing a TIM-barrel fold (N-ter); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 0.894
mce
Methylmalonyl-CoA epimerase; Function of strongly homologous gene; enzyme.
  
 0.836
CCH87893.1
Homologs of previously reported genes of unknown function.
 
     0.722
CCH87895.1
Monooxygenase FAD-binding protein; Function of strongly homologous gene; enzyme.
 
  
 0.714
CCH87594.1
Homologs of previously reported genes of unknown function.
      0.697
CCH87896.1
Putative Metallo-beta-lactamase family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
    0.681
CCH87749.1
Fumarylacetoacetase; Function of strongly homologous gene; enzyme.
 
  
 0.636
CCH87608.1
Fumarylacetoacetate hydrolase family protein; Function of strongly homologous gene; enzyme.
  
  
 0.608
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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