STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH87925.1Sigma 54 interacting domain protein; Function of strongly homologous gene; factor. (470 aa)    
Predicted Functional Partners:
CCH90743.1
Putative phytochrome sensor protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
     0.918
CCH85756.1
Putative phytochrome sensor protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative receptor.
 
     0.913
CCH87488.1
Two component signal transduction histidine kinase; Function of strongly homologous gene; enzyme.
 
 
 0.889
CCH87919.1
RNA polymerase, sigma 54 (sigma N) factor; Function of strongly homologous gene; factor.
 
   
 0.817
ribBA
Riboflavin biosynthesis protein ribBA [Includes: 3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
     
  0.757
gltB
Glutamate synthase [NADPH] large chain (NADPH-GOGAT); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
     
 0.716
CCH90658.1
Sensor protein with an histidine kinase signal transduction domain; Function of strongly homologous gene; regulator.
   
 0.597
CCH85554.1
Serine phosphatase RsbU, regulator of sigma subunit; Function of strongly homologous gene; enzyme.
   
 0.559
CCH85780.1
Serine phosphatase RsbU, regulator of sigma subunit (modular protein); Function of strongly homologous gene; enzyme.
   
 0.559
CCH88547.1
Two component sensory transduction histidine kinase with PAS/PAC sensory domains (fragment); Function of strongly homologous gene; enzyme.
   
 0.559
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.