STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH87925.1Sigma 54 interacting domain protein; Function of strongly homologous gene; factor. (470 aa)    
Predicted Functional Partners:
CCH90743.1
Putative phytochrome sensor protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
     0.919
CCH85756.1
Putative phytochrome sensor protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative receptor.
 
     0.914
CCH87919.1
RNA polymerase, sigma 54 (sigma N) factor; Function of strongly homologous gene; factor.
 
   
 0.812
CCH87488.1
Two component signal transduction histidine kinase; Function of strongly homologous gene; enzyme.
 
 
 
 0.637
CCH87681.1
Sigma54 specific transcriptional regulator, Fis family; Function of strongly homologous gene; factor.
  
     0.545
gltB
Glutamate synthase [NADPH] large chain (NADPH-GOGAT); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
     
 0.521
rho
Transcription termination factor rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.
  
     0.509
CCH87514.1
Oxidoreductase FAD-binding; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the globin family.
     
 0.483
CCH87926.1
Membrane protein of unknown function; No homology to any previously reported sequences.
       0.462
CCH88058.1
L-erythro-3,5-diaminohexanoate dehydrogenase; Function of strongly homologous gene; enzyme.
 
 
    0.441
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.