STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH88000.1Homologs of previously reported genes of unknown function. (67 aa)    
Predicted Functional Partners:
CCH87208.1
Cytidine deaminase; Function of strongly homologous gene; enzyme.
  
     0.676
CCH90424.1
Conserved protein of unknown function, putative Carboxypeptidase domain; Homologs of previously reported genes of unknown function.
  
     0.648
CCH86129.1
Homologs of previously reported genes of unknown function.
  
     0.608
CCH89359.1
Homologs of previously reported genes of unknown function.
  
     0.600
CCH89875.1
Homologs of previously reported genes of unknown function.
  
     0.551
CCH90053.1
Homologs of previously reported genes of unknown function.
  
     0.547
CCH85720.1
Homologs of previously reported genes of unknown function.
  
     0.540
CCH89766.1
Homologs of previously reported genes of unknown function.
  
     0.540
CCH88001.1
Homologs of previously reported genes of unknown function.
       0.534
CCH89970.1
Putative sigma factor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.
  
     0.509
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.