STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH88007.1Homologs of previously reported genes of unknown function. (263 aa)    
Predicted Functional Partners:
CCH90524.1
Homologs of previously reported genes of unknown function.
  
     0.730
CCH86445.1
Homologs of previously reported genes of unknown function.
  
     0.702
CCH90185.1
Homologs of previously reported genes of unknown function.
  
     0.702
CCH89867.1
Homologs of previously reported genes of unknown function.
  
     0.694
CCH89766.1
Homologs of previously reported genes of unknown function.
  
     0.663
rpsD
30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
 
     0.662
CCH86190.1
Protein of unknown function; No homology to any previously reported sequences.
  
     0.658
CCH89344.1
Homologs of previously reported genes of unknown function.
  
     0.631
CCH89715.1
Phage shock protein A, PspA; Function of strongly homologous gene; cell process.
  
     0.618
CCH89772.1
Homologs of previously reported genes of unknown function.
  
     0.612
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.