STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH88017.1Homologs of previously reported genes of unknown function. (238 aa)    
Predicted Functional Partners:
CCH86071.1
Transcriptional regulator, XRE family; Function of strongly homologous gene; regulator.
   
 
 0.923
argG
Argininosuccinate synthetase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the argininosuccinate synthase family. Type 2 subfamily.
       0.615
cysS-2
cysteinyl-tRNA synthetase 2; Catalyzes the ATP-dependent condensation of GlcN-Ins and L- cysteine to form L-Cys-GlcN-Ins; Belongs to the class-I aminoacyl-tRNA synthetase family. MshC subfamily.
       0.544
CCH88019.1
Deoxyguanosinetriphosphate triphosphohydrolase-like protein; Function of strongly homologous gene; enzyme; Belongs to the dGTPase family. Type 2 subfamily.
       0.544
whiB-4
Transcription factor, WhiB family; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
  
     0.448
CCH87305.1
Na+:solute symporter; Function of strongly homologous gene; transporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
     0.419
CCH89102.1
Two-component response regulator receiver and ANTAR, GAF and CheY domains; Function of strongly homologous gene; regulator.
  
     0.415
CCH87138.1
Putative transcription antitermination regulator with GAF sensor domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; regulator.
  
     0.412
CCH90407.1
Transcriptional regulator, XRE family; Function of strongly homologous gene; regulator.
 
 
 0.401
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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