STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CCH88020.1Putative ATP-grasp superfamily enzyme; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (287 aa)    
Predicted Functional Partners:
metH
B12-dependent homocysteine-N5-methyltetrahydrofolate transmethylase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
     
 0.721
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
 
     0.642
CCH88022.1
Putative haloacid dehalogenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.600
CCH90321.1
Acyl dehydratase; Function of strongly homologous gene; enzyme; Belongs to the UPF0336 family.
  
     0.587
CCH87598.1
Homologs of previously reported genes of unknown function.
  
    0.582
MODMU_3642
Fragment of Zn-dependent hydrolase, glyoxylase (part 1); Function of strongly homologous gene; enzyme.
   
    0.511
qcrC
Ubiquinol-cytochrome c reductase cytochrome c subunit; Function of strongly homologous gene; enzyme.
  
     0.473
CCH88098.1
Transcriptional regulator, MerR family; Function of strongly homologous gene; regulator.
  
     0.445
CCH90308.1
Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.426
CCH88038.1
Protein pafB; Function of strongly homologous gene; regulator.
 
     0.420
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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