STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH88029.1Protein of unknown function; No homology to any previously reported sequences. (185 aa)    
Predicted Functional Partners:
CCH85815.1
Homologs of previously reported genes of unknown function.
  
     0.562
pup
Conserved protein of unknown function; Protein modifier that is covalently attached to lysine residues of substrate proteins, thereby targeting them for proteasomal degradation. The tagging system is termed pupylation.
       0.540
CCH88031.1
Putative endonuclease (modular protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.482
prcB
Proteasome endopeptidase complex, beta component; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. Belongs to the peptidase T1B family.
       0.482
prcA
20S proteasome subunit alpha; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. Belongs to the peptidase T1A family.
       0.482
CCH89849.1
Protein of unknown function; No homology to any previously reported sequences.
  
     0.457
CCH89739.1
Homologs of previously reported genes of unknown function.
  
     0.445
CCH88203.1
Homologs of previously reported genes of unknown function.
  
     0.444
CCH89738.1
Homologs of previously reported genes of unknown function.
  
     0.423
CCH90560.1
Putative integral membrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component.
  
     0.417
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.