Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CCH85763.1 | arc | MODMU_0301 | MODMU_2598 | Homologs of previously reported genes of unknown function. | Putative AAA+ family ATPase; ATPase which is responsible for recognizing, binding, unfolding and translocation of pupylated proteins into the bacterial 20S proteasome core particle. May be essential for opening the gate of the 20S proteasome via an interaction with its C-terminus, thereby allowing substrate entry and access to the site of proteolysis. Thus, the C-termini of the proteasomal ATPase may function like a 'key in a lock' to induce gate opening and therefore regulate proteolysis. | 0.808 |
| CCH85763.1 | pafA | MODMU_0301 | MODMU_2605 | Homologs of previously reported genes of unknown function. | Pup--protein ligase; Catalyzes the covalent attachment of the prokaryotic ubiquitin-like protein modifier Pup to the proteasomal substrate proteins, thereby targeting them for proteasomal degradation. This tagging system is termed pupylation. The ligation reaction involves the side-chain carboxylate of the C-terminal glutamate of Pup and the side- chain amino group of a substrate lysine. | 0.724 |
| CCH85763.1 | prcA | MODMU_0301 | MODMU_2604 | Homologs of previously reported genes of unknown function. | 20S proteasome subunit alpha; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. Belongs to the peptidase T1A family. | 0.984 |
| CCH85763.1 | prcB | MODMU_0301 | MODMU_2603 | Homologs of previously reported genes of unknown function. | Proteasome endopeptidase complex, beta component; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. Belongs to the peptidase T1B family. | 0.958 |
| CCH85763.1 | pup | MODMU_0301 | MODMU_2601 | Homologs of previously reported genes of unknown function. | Conserved protein of unknown function; Protein modifier that is covalently attached to lysine residues of substrate proteins, thereby targeting them for proteasomal degradation. The tagging system is termed pupylation. | 0.572 |
| CCH88031.1 | CCH88035.1 | MODMU_2602 | MODMU_2606 | Putative endonuclease (modular protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. | Homologs of previously reported genes of unknown function. | 0.543 |
| CCH88031.1 | pafA | MODMU_2602 | MODMU_2605 | Putative endonuclease (modular protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. | Pup--protein ligase; Catalyzes the covalent attachment of the prokaryotic ubiquitin-like protein modifier Pup to the proteasomal substrate proteins, thereby targeting them for proteasomal degradation. This tagging system is termed pupylation. The ligation reaction involves the side-chain carboxylate of the C-terminal glutamate of Pup and the side- chain amino group of a substrate lysine. | 0.619 |
| CCH88031.1 | prcA | MODMU_2602 | MODMU_2604 | Putative endonuclease (modular protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. | 20S proteasome subunit alpha; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. Belongs to the peptidase T1A family. | 0.829 |
| CCH88031.1 | prcB | MODMU_2602 | MODMU_2603 | Putative endonuclease (modular protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. | Proteasome endopeptidase complex, beta component; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. Belongs to the peptidase T1B family. | 0.829 |
| CCH88031.1 | pup | MODMU_2602 | MODMU_2601 | Putative endonuclease (modular protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. | Conserved protein of unknown function; Protein modifier that is covalently attached to lysine residues of substrate proteins, thereby targeting them for proteasomal degradation. The tagging system is termed pupylation. | 0.764 |
| CCH88035.1 | CCH88031.1 | MODMU_2606 | MODMU_2602 | Homologs of previously reported genes of unknown function. | Putative endonuclease (modular protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. | 0.543 |
| CCH88035.1 | pafA | MODMU_2606 | MODMU_2605 | Homologs of previously reported genes of unknown function. | Pup--protein ligase; Catalyzes the covalent attachment of the prokaryotic ubiquitin-like protein modifier Pup to the proteasomal substrate proteins, thereby targeting them for proteasomal degradation. This tagging system is termed pupylation. The ligation reaction involves the side-chain carboxylate of the C-terminal glutamate of Pup and the side- chain amino group of a substrate lysine. | 0.705 |
| CCH88035.1 | prcA | MODMU_2606 | MODMU_2604 | Homologs of previously reported genes of unknown function. | 20S proteasome subunit alpha; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. Belongs to the peptidase T1A family. | 0.543 |
| CCH88035.1 | prcB | MODMU_2606 | MODMU_2603 | Homologs of previously reported genes of unknown function. | Proteasome endopeptidase complex, beta component; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. Belongs to the peptidase T1B family. | 0.543 |
| CCH88035.1 | pup | MODMU_2606 | MODMU_2601 | Homologs of previously reported genes of unknown function. | Conserved protein of unknown function; Protein modifier that is covalently attached to lysine residues of substrate proteins, thereby targeting them for proteasomal degradation. The tagging system is termed pupylation. | 0.485 |
| CCH90163.1 | pafA | MODMU_4782 | MODMU_2605 | Putative carboxylate-amine ligase; ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity; Belongs to the glutamate--cysteine ligase type 2 family. YbdK subfamily. | Pup--protein ligase; Catalyzes the covalent attachment of the prokaryotic ubiquitin-like protein modifier Pup to the proteasomal substrate proteins, thereby targeting them for proteasomal degradation. This tagging system is termed pupylation. The ligation reaction involves the side-chain carboxylate of the C-terminal glutamate of Pup and the side- chain amino group of a substrate lysine. | 0.682 |
| arc | CCH85763.1 | MODMU_2598 | MODMU_0301 | Putative AAA+ family ATPase; ATPase which is responsible for recognizing, binding, unfolding and translocation of pupylated proteins into the bacterial 20S proteasome core particle. May be essential for opening the gate of the 20S proteasome via an interaction with its C-terminus, thereby allowing substrate entry and access to the site of proteolysis. Thus, the C-termini of the proteasomal ATPase may function like a 'key in a lock' to induce gate opening and therefore regulate proteolysis. | Homologs of previously reported genes of unknown function. | 0.808 |
| arc | fabD | MODMU_2598 | MODMU_0141 | Putative AAA+ family ATPase; ATPase which is responsible for recognizing, binding, unfolding and translocation of pupylated proteins into the bacterial 20S proteasome core particle. May be essential for opening the gate of the 20S proteasome via an interaction with its C-terminus, thereby allowing substrate entry and access to the site of proteolysis. Thus, the C-termini of the proteasomal ATPase may function like a 'key in a lock' to induce gate opening and therefore regulate proteolysis. | Acyl-carrier-protein S-malonyltransferase; Function of strongly homologous gene; enzyme. | 0.457 |
| arc | pafA | MODMU_2598 | MODMU_2605 | Putative AAA+ family ATPase; ATPase which is responsible for recognizing, binding, unfolding and translocation of pupylated proteins into the bacterial 20S proteasome core particle. May be essential for opening the gate of the 20S proteasome via an interaction with its C-terminus, thereby allowing substrate entry and access to the site of proteolysis. Thus, the C-termini of the proteasomal ATPase may function like a 'key in a lock' to induce gate opening and therefore regulate proteolysis. | Pup--protein ligase; Catalyzes the covalent attachment of the prokaryotic ubiquitin-like protein modifier Pup to the proteasomal substrate proteins, thereby targeting them for proteasomal degradation. This tagging system is termed pupylation. The ligation reaction involves the side-chain carboxylate of the C-terminal glutamate of Pup and the side- chain amino group of a substrate lysine. | 0.951 |
| arc | panB | MODMU_2598 | MODMU_1897 | Putative AAA+ family ATPase; ATPase which is responsible for recognizing, binding, unfolding and translocation of pupylated proteins into the bacterial 20S proteasome core particle. May be essential for opening the gate of the 20S proteasome via an interaction with its C-terminus, thereby allowing substrate entry and access to the site of proteolysis. Thus, the C-termini of the proteasomal ATPase may function like a 'key in a lock' to induce gate opening and therefore regulate proteolysis. | 3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family. | 0.582 |
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