STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH88037.1Homologs of previously reported genes of unknown function. (372 aa)    
Predicted Functional Partners:
MODMU_3177
Fragment of Flagellin assembly, membrane protein MviN (part 1); Function of strongly homologous gene; structure.
 
     0.801
CCH88603.1
Thiamin pyrophosphokinase, catalytic region; Function of strongly homologous gene; enzyme.
 
     0.801
CCH88602.1
Homologs of previously reported genes of unknown function.
 
     0.796
CCH88597.1
Homologs of previously reported genes of unknown function.
  
     0.775
CCH88598.1
Glycosyltransferase; Function of strongly homologous gene; enzyme.
  
     0.689
CCH88038.1
Protein pafB; Function of strongly homologous gene; regulator.
       0.614
pafC
Transcriptional regulator; Function of strongly homologous gene; regulator.
       0.614
tatA
Sec-independent protein secretion pathway component; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
       0.442
CCH88040.1
Homologs of previously reported genes of unknown function.
       0.430
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.