STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH88047.1Putative dipeptidase pepE; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (380 aa)    
Predicted Functional Partners:
CCH88048.1
Transcriptional regulator, AsnC family; Function of strongly homologous gene; regulator.
  
 
 0.884
CCH88046.1
5'-3' exonuclease; Function of strongly homologous gene; enzyme.
  
  
 0.634
cobL
Precorrin-6Y C(5,15)-methyltransferase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
      0.542
CCH88049.1
Radical SAM domain protein.
       0.527
hisS
Histidyl-tRNA synthetase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
  
 0.517
korA
2-oxoacid:ferredoxin oxidoreductase, alpha subunit; Function of strongly homologous gene; enzyme.
     
 0.479
pepN
Function of strongly homologous gene; enzyme.
  
 
 0.476
cofD
LPPG:FO 2-phospho-L-lactate transferase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
  
 0.447
guaB
Inosine-5'-monophosphate dehydrogenase (IMP dehydrogenase) (IMPDH) (IMPD); Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
   
   0.446
CCH88207.1
Putative metal-dependent membrane protease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.436
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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