STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH88052.12-keto-3-deoxy-L-rhamnonate aldolase; Function of strongly homologous gene; enzyme; Belongs to the HpcH/HpaI aldolase family. (223 aa)    
Predicted Functional Partners:
gabD
Succinate-semialdehyde dehydrogenase [NADP+] 1; Function of strongly homologous gene; enzyme.
  
 
 0.910
gabD1
Succinate-semialdehyde dehydrogenase [NADP+]; Function of strongly homologous gene; enzyme.
  
 
 0.910
CCH89975.1
Succinate-semialdehyde dehydrogenase [NADP+]; Function of strongly homologous gene; enzyme.
  
 
 0.910
CCH88053.1
1-acyl-sn-glycerol-3-phosphate acyltransferase; Function of strongly homologous gene; enzyme.
       0.603
ald-2
Aldehyde dehydrogenase; Function of strongly homologous gene; enzyme; Belongs to the aldehyde dehydrogenase family.
  
 
 0.551
CCH88384.1
Phenol 2-monooxygenase; Function of strongly homologous gene; enzyme.
 
     0.529
CCH88406.1
Phenol 2-monooxygenase; Function of strongly homologous gene; enzyme.
 
     0.528
rhaD
Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; Function of strongly homologous gene; enzyme.
    
  0.515
attM
Zn-dependent hydrolase; Function of strongly homologous gene; enzyme.
       0.491
CCH86269.1
Putative Mandelate racemase/muconate lactonizing protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
  
 0.489
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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