STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH88055.1Acetyltransferase; Function of strongly homologous gene; enzyme. (170 aa)    
Predicted Functional Partners:
CCH88054.1
Lipase maturation factor 1; Function of strongly homologous gene; enzyme.
       0.727
CCH86289.1
GCN5-related N-acetyltransferase; Function of strongly homologous gene; enzyme.
 
     0.640
CCH88056.1
Homologs of previously reported genes of unknown function.
       0.605
elaA
Acetyltransferase; Function of strongly homologous gene; enzyme.
      0.560
kamA
Lysine 2,3-aminomutase; Function of strongly homologous gene; enzyme.
       0.525
CCH89979.1
Putative regulator, ArsR family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
     0.422
rnc
Ribonuclease 3; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.412
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.