STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH88061.1D-lysine 5,6-aminomutase beta subunit, cobalamin B12-binding domain; Function of strongly homologous gene; enzyme. (248 aa)    
Predicted Functional Partners:
CCH88060.1
D-Lysine 56-aminomutase, alpha subunit; Function of strongly homologous gene; enzyme.
 
 0.999
CCH88058.1
L-erythro-3,5-diaminohexanoate dehydrogenase; Function of strongly homologous gene; enzyme.
 
 
 0.991
kamA
Lysine 2,3-aminomutase; Function of strongly homologous gene; enzyme.
 
  
 0.988
CCH88062.1
Thioesterase; Function of strongly homologous gene; enzyme.
 
   
 0.960
mutL
Methylaspartate mutase; Function of strongly homologous gene; enzyme.
 
     0.829
CCH90410.1
Homologs of previously reported genes of unknown function.
 
   
 0.795
metH
B12-dependent homocysteine-N5-methyltetrahydrofolate transmethylase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
  
  
 0.741
deoC
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate.
   
 
 0.737
CCH87827.1
Homologs of previously reported genes of unknown function.
 
   
 0.668
CCH88059.1
Amidohydrolase; Function of strongly homologous gene; enzyme.
       0.640
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.