STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CCH88061.1D-lysine 5,6-aminomutase beta subunit, cobalamin B12-binding domain; Function of strongly homologous gene; enzyme. (248 aa)    
Predicted Functional Partners:
CCH88060.1
D-Lysine 56-aminomutase, alpha subunit; Function of strongly homologous gene; enzyme.
 
 0.999
CCH88058.1
L-erythro-3,5-diaminohexanoate dehydrogenase; Function of strongly homologous gene; enzyme.
 
 
 0.989
kamA
Lysine 2,3-aminomutase; Function of strongly homologous gene; enzyme.
 
  
 0.985
CCH88062.1
Thioesterase; Function of strongly homologous gene; enzyme.
 
   
 0.961
metH
B12-dependent homocysteine-N5-methyltetrahydrofolate transmethylase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
  
 
 0.929
mutL
Methylaspartate mutase; Function of strongly homologous gene; enzyme.
 
     0.830
deoC
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate.
   
 0.809
CCH90410.1
Homologs of previously reported genes of unknown function.
 
   
 0.800
gltB
Glutamate synthase [NADPH] large chain (NADPH-GOGAT); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
     
  0.757
CCH86438.1
L-threonine ammonia-lyase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
   
 
  0.721
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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