Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CCH88068.1Major facilitator superfamily, general substrate transporter; Function of strongly homologous gene; transporter. (456 aa)    
Predicted Functional Partners:
tdk
Thymidine kinase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
    
  0.870
CCH88070.1
Glycerophosphoryl diester phosphodiesterase; Function of strongly homologous gene; enzyme.
 
     0.790
CCH88069.1
Phospholipid/glycerol acyltransferase (modular protein); Function of strongly homologous gene; enzyme.
  
    0.635
rbpA
Conserved protein of unknown function; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family.
       0.591
CCH88071.1
Homologs of previously reported genes of unknown function.
       0.421
tipA
HTH-type transcriptional activator tipA; Function of strongly homologous gene; regulator.
 
     0.403
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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