Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH88142.1Substrate-binding region of ABC-type glycine betaine transport system. (318 aa)    
Predicted Functional Partners:
opuAA
Glycine betaine transport ATP-binding protein opuAA; Function of strongly homologous gene; enzyme.
 
 0.999
proW
Glycine betaine/L-proline transport system permease protein proW; Function of strongly homologous gene; transporter.
 
 
 0.999
CCH86186.1
ABC-type proline/glycine betaine transport system, permease component; Function of strongly homologous gene; transporter.
 
 
 0.730
CCH86187.1
ABC-type proline/glycine betaine transport system, permease component; Function of strongly homologous gene; transporter.
 
 
 0.724
CCH87735.1
Osmoprotectant transport system substrate-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
 
 0.575
CCH88145.1
Cation-transporting ATPase E; Function of strongly homologous gene; enzyme.
       0.550
CCH86188.1
Osmoprotectant transport system substrate-binding protein; Function of strongly homologous gene; transporter.
  
 
 0.542
CCH88314.1
Dimethylglycine oxidase; Function of strongly homologous gene; enzyme; Belongs to the GcvT family.
 
  
 0.522
purN
Phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.
   
  
 0.505
betA
Choline dehydrogenase; Function of strongly homologous gene; enzyme.
 
   
 0.492
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.