STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tauDAlpha-ketoglutarate-dependent taurine dioxygenase (fragment); Function of strongly homologous gene; enzyme. (142 aa)    
Predicted Functional Partners:
CCH89558.1
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component; Function of strongly homologous gene; transporter.
 
 0.900
CCH87582.1
NADPH-dependent fmn reductase.
 
 
  0.859
CCH88157.1
Phthalate 4,5-dioxygenase (modular protein); Function of strongly homologous gene; enzyme; Belongs to the cytochrome P450 family.
  
 
 0.821
CCH87556.1
NADPH-dependent FMN reductase; Function of strongly homologous gene; enzyme.
 
 
  0.792
cysH
Phosphoadenosine phosphosulfate reductase; Reduction of activated sulfate into sulfite. Belongs to the PAPS reductase family. CysH subfamily.
     
 0.761
fdhA2
Formate dehydrogenase, alpha subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
     
  0.753
sir
Sulfite reductase [ferredoxin]; Function of strongly homologous gene; enzyme; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
     
 0.751
CCH86937.1
ABC transporter, ATP-binding protein; Function of strongly homologous gene; transporter.
  
 
 0.751
CCH89559.1
ABC transporter (ATP binding protein)(tauB-like); Function of strongly homologous gene; transporter.
  
 
 0.751
CCH86771.1
Oxidoreductase molybdopterin binding; Function of strongly homologous gene; enzyme.
   
 
  0.744
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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