STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pobB-2Phthalate 4,5-dioxygenase; Function of strongly homologous gene; enzyme. (327 aa)    
Predicted Functional Partners:
CCH88151.1
Cytochrome P450; Function of strongly homologous gene; enzyme; Belongs to the cytochrome P450 family.
 0.987
CCH87897.1
Cytochrome P450; Function of strongly homologous gene; enzyme; Belongs to the cytochrome P450 family.
 0.952
CCH85716.1
Cytochrome P450; Function of strongly homologous gene; enzyme; Belongs to the cytochrome P450 family.
 0.949
CCH90334.1
Putative cytochrome P450; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme; Belongs to the cytochrome P450 family.
 0.946
cyp
Cytochrome P450 124; Function of strongly homologous gene; enzyme; Belongs to the cytochrome P450 family.
 0.932
CCH87669.1
Cytochrome P450; Function of strongly homologous gene; enzyme; Belongs to the cytochrome P450 family.
 0.856
CCH88414.1
Cytochrome P450; Function of strongly homologous gene; enzyme; Belongs to the cytochrome P450 family.
 0.807
nuoI
NADH dehydrogenase subunit I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.
  
 
 0.772
sufU
FeS cluster assembly, scaffold; Function of strongly homologous gene; cell process.
  
 0.745
nuoD
NADH-quinone oxidoreductase chain D (NADH dehydrogenase I, chain D) (NDH-1, chain D); NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family.
  
 
 0.738
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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