Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CCH88153.1Transcriptional regulator, IclR family protein; Function of strongly homologous gene; regulator. (242 aa)    
Predicted Functional Partners:
CCH89848.1
Transcriptional regulator, IclR family; Function of strongly homologous gene; factor.
  
     0.771
CCH87891.1
Transcriptional regulator, IclR family; Function of strongly homologous gene; factor.
  
     0.763
korA
2-oxoacid:ferredoxin oxidoreductase, alpha subunit; Function of strongly homologous gene; enzyme.
    
  0.588
pobB-2
Phthalate 4,5-dioxygenase; Function of strongly homologous gene; enzyme.
     
 0.560
CCH87536.1
Allophanate hydrolase subunit 1; Function of strongly homologous gene; enzyme.
  
    0.503
CCH88151.1
Cytochrome P450; Function of strongly homologous gene; enzyme; Belongs to the cytochrome P450 family.
       0.490
ahs
Allophanate hydrolase, subunit2; Function of strongly homologous gene; enzyme.
  
    0.484
accD
Acetyl-coenzyme A carboxylase carboxyl transferase subunits beta/alpha; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family.
     
  0.421
accD-2
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; Function of strongly homologous gene; enzyme.
     
  0.421
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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