CCH88165.1 protein (Modestobacter marinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CCH88165.1

Homologs of previously reported genes of unknown function. (317 aa)

Predicted Functional Partners:

CCH88166.1

0.905

CCH88171.1

0.841

CCH88164.1

0.832

CCH88167.1

0.832

CCH90608.1

0.798

CCH88163.1

0.773

CCH88189.1

0.717

CCH86530.1

0.605

CCH87700.1

0.601

CCH86817.1

0.555

Your Current Organism:

Modestobacter marinus

NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCH86530.1	CCH88164.1	MODMU_1080	MODMU_2735	Dehydrogenase; Function of strongly homologous gene; enzyme.	Homologs of previously reported genes of unknown function.	0.724
CCH86530.1	CCH88165.1	MODMU_1080	MODMU_2736	Dehydrogenase; Function of strongly homologous gene; enzyme.	Homologs of previously reported genes of unknown function.	0.605
CCH86817.1	CCH88164.1	MODMU_1368	MODMU_2735	4Fe-4S ferredoxin, iron-sulfur binding; Function of strongly homologous gene; carrier.	Homologs of previously reported genes of unknown function.	0.456
CCH86817.1	CCH88165.1	MODMU_1368	MODMU_2736	4Fe-4S ferredoxin, iron-sulfur binding; Function of strongly homologous gene; carrier.	Homologs of previously reported genes of unknown function.	0.555
CCH86817.1	CCH88171.1	MODMU_1368	MODMU_2742	4Fe-4S ferredoxin, iron-sulfur binding; Function of strongly homologous gene; carrier.	Homologs of previously reported genes of unknown function.	0.724
CCH87700.1	CCH88164.1	MODMU_2268	MODMU_2735	Oxidoreductase domain protein; Function of strongly homologous gene; enzyme.	Homologs of previously reported genes of unknown function.	0.727
CCH87700.1	CCH88165.1	MODMU_2268	MODMU_2736	Oxidoreductase domain protein; Function of strongly homologous gene; enzyme.	Homologs of previously reported genes of unknown function.	0.601
CCH88163.1	CCH88164.1	MODMU_2734	MODMU_2735	Putative antibiotic antiporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Belongs to the major facilitator superfamily.	Homologs of previously reported genes of unknown function.	0.773
CCH88163.1	CCH88165.1	MODMU_2734	MODMU_2736	Putative antibiotic antiporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Belongs to the major facilitator superfamily.	Homologs of previously reported genes of unknown function.	0.773
CCH88163.1	CCH88166.1	MODMU_2734	MODMU_2737	Putative antibiotic antiporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Belongs to the major facilitator superfamily.	Hydroxypyruvate isomerase; Function of strongly homologous gene; enzyme; Belongs to the hyi family.	0.773
CCH88163.1	CCH88167.1	MODMU_2734	MODMU_2738	Putative antibiotic antiporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Belongs to the major facilitator superfamily.	Pyranose oxidase; Function of strongly homologous gene; enzyme.	0.459
CCH88163.1	CCH88171.1	MODMU_2734	MODMU_2742	Putative antibiotic antiporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Belongs to the major facilitator superfamily.	Homologs of previously reported genes of unknown function.	0.405
CCH88164.1	CCH86530.1	MODMU_2735	MODMU_1080	Homologs of previously reported genes of unknown function.	Dehydrogenase; Function of strongly homologous gene; enzyme.	0.724
CCH88164.1	CCH86817.1	MODMU_2735	MODMU_1368	Homologs of previously reported genes of unknown function.	4Fe-4S ferredoxin, iron-sulfur binding; Function of strongly homologous gene; carrier.	0.456
CCH88164.1	CCH87700.1	MODMU_2735	MODMU_2268	Homologs of previously reported genes of unknown function.	Oxidoreductase domain protein; Function of strongly homologous gene; enzyme.	0.727
CCH88164.1	CCH88163.1	MODMU_2735	MODMU_2734	Homologs of previously reported genes of unknown function.	Putative antibiotic antiporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Belongs to the major facilitator superfamily.	0.773
CCH88164.1	CCH88165.1	MODMU_2735	MODMU_2736	Homologs of previously reported genes of unknown function.	Homologs of previously reported genes of unknown function.	0.832
CCH88164.1	CCH88166.1	MODMU_2735	MODMU_2737	Homologs of previously reported genes of unknown function.	Hydroxypyruvate isomerase; Function of strongly homologous gene; enzyme; Belongs to the hyi family.	0.898
CCH88164.1	CCH88167.1	MODMU_2735	MODMU_2738	Homologs of previously reported genes of unknown function.	Pyranose oxidase; Function of strongly homologous gene; enzyme.	0.763
CCH88164.1	CCH88171.1	MODMU_2735	MODMU_2742	Homologs of previously reported genes of unknown function.	Homologs of previously reported genes of unknown function.	0.808