STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH88166.1Hydroxypyruvate isomerase; Function of strongly homologous gene; enzyme; Belongs to the hyi family. (258 aa)    
Predicted Functional Partners:
gyaR
Glyoxylate reductase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
  
 
 0.913
CCH90543.1
Serine-glyoxylate aminotransferase; Function of strongly homologous gene; enzyme.
     
  0.900
CCH88165.1
Homologs of previously reported genes of unknown function.
 
     0.893
CCH88164.1
Homologs of previously reported genes of unknown function.
 
     0.885
CCH88163.1
Putative antibiotic antiporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Belongs to the major facilitator superfamily.
       0.773
CCH88171.1
Homologs of previously reported genes of unknown function.
 
     0.625
CCH88167.1
Pyranose oxidase; Function of strongly homologous gene; enzyme.
 
     0.544
CCH88161.1
Glycoside hydrolase; Function of strongly homologous gene; enzyme.
       0.541
CCH88162.1
Putative acetyl esterase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.541
CCH88330.1
Putative Xylose isomerase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.507
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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