STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH88173.1ABC transporter ATP-binding protein, putative oligo/dipeptide transport protein (modular protein); Function of strongly homologous gene; transporter; Belongs to the binding-protein-dependent transport system permease family. (674 aa)    
Predicted Functional Partners:
CCH88174.1
Oligopeptide ABC transporter, permease protein; Function of strongly homologous gene; transporter.
 
 0.990
CCH88193.1
ABC transporter permease protein; Function of strongly homologous gene; transporter.
 
 0.962
CCH87619.1
Binding-protein-dependent transport systems inner membrane component; Function of strongly homologous gene; transporter.
 
 0.957
CCH88395.1
ABC transporter permease protein; Function of strongly homologous gene; transporter.
 
 0.957
CCH89594.1
Peptide transport permease; Function of strongly homologous gene; transporter.
 
 0.957
CCH86581.1
Putative peptide transport permease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 0.956
CCH88345.1
Peptide ABC transporter permease subunit; Function of strongly homologous gene; transporter.
 
 0.956
CCH89428.1
Permease of peptide ABC transporter; Function of strongly homologous gene; transporter.
 
 0.956
dppB
ABC transporter, permease protein; Function of strongly homologous gene; transporter.
 
 0.926
CCH88175.1
Putative ABC-type dipeptide transport system, extracellular component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 
 0.925
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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