STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH88188.1Xylose isomerase; Function of strongly homologous gene; enzyme. (433 aa)    
Predicted Functional Partners:
CCH88190.1
Oxidoreductase; Function of strongly homologous gene; enzyme.
  
  
 0.845
CCH88185.1
Oxidoreductase; Function of strongly homologous gene; enzyme.
  
  
 0.810
CCH88189.1
Pyranose oxidase; Function of strongly homologous gene; enzyme.
       0.778
CCH88186.1
Beta-xylosidase; Function of strongly homologous gene; enzyme; Belongs to the glycosyl hydrolase 43 family.
       0.773
CCH88187.1
Glycoside hydrolase; Function of strongly homologous gene; enzyme.
       0.773
CCH88181.1
Glycoside hydrolase family 2, sugar binding; Function of strongly homologous gene; enzyme.
       0.728
CCH88180.1
FAD-binding monooxygenase; Function of strongly homologous gene; enzyme.
       0.723
CCH88182.1
Inosine-uridine preferring nucleoside hydrolase; Function of strongly homologous gene; enzyme.
       0.723
CCH88183.1
Drug resistance export protein; Function of strongly homologous gene; transporter.
  
    0.723
CCH88184.1
Esterase/lipase-like protein; Function of strongly homologous gene; enzyme.
       0.723
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.